There is a Glyph issue, and a shard issue.
Shard issue being very small (Restart of game fixes)
Glyph issue being very huge (Nothing Works)
As @Sixstringsamurai has said down in the post, this seems right, about the proper disappearance of the crafting window, it has some sort of a sequence.
Shard issue: (Some shards randomly will be chosen, and be placed down to either 1, or 3 in my case)
5/18/2019 Logged in this morning, and it happened. (After patch H)
5/19/2019 Logged in this morning, and it did not happen.
It seems as if it is completely random, or it happens after patches. Seeing as there was a patch before my log in 5/18/2019… (Glyphs), can’t say for sure yet.